FANIN Nicolas

FANIN Nicolas

Researcher

Researcher

N_fanin

INRAE Centre de Bordeaux Aquitaine

71 Avenue E. Bourlaux, CS 20032 33882 Villenave d'Ornon cedex

05 57 12 25 16

nicolas.fanin@inrae.fr

 

Education and experience

•2017: Researcher INRAE, Department Forest, Grassland and Freshwater Ecology, Bordeaux-France.

N_fanin1

•2015-2016: Postdoctoral position, Department of Forest Ecology and Management, Swedish University of Agricultural Sciences (SLU), Umeå-Sweden. How are plant species and functional group effects on ecosystem properties mediated by environmental context.

•2013-2014: Postdoctoral position, Department of Environment and Agronomy, INRAE, Reims-France. Functional role of microbial communities during litter decomposition across contrasting land use.

•2009-2012: PhD thesis, Centre d’Ecologie Fonctionnelle et Evolutive, CNRS, Montpellier-France. Silver medal 2014 “Young Researcher” from the French Academy of Agriculture, Alimentation & Environment. Influence of litter quality on microbial functioning in tropical rainforest

Research and skills

Axes Nicolas Fanin

The microbial “black box” of soil remains largely unknown despite the central role that microorganisms play in the recycling of organic matter and the mineralization of nutrients. In particular, my research aims to evaluate the role of soil functional diversity in the coupling between carbon, nitrogen and phosphorus cycles. During my research, four main axes have been identified as factors that may influence the functionality of soil microbial communities: the effects of the diversity and quality of resources of mineral or organic origin (Axis 1); habitat characteristics, particularly different soil types, land use, and changes in conditions from the green leaf to the soil (Axis 2); biotic interactions, especially interactions with plants and fauna (Axis 3); and finally global changes, including climate alterations, species invasions, or pollution at different spatial scales (Axis 4). In turn, modifications in the functionality of soil microbial communities can alter numerous biogeochemical processes, which themselves underpin the multifunctionality of terrestrial ecosystems.

HDR (Habilitation to Supervise Research), FANIN, 2026Functional Microbial Ecology: The Role of Microbial Communities in Organic Matter Mineralization and Its Consequences for Biogeochemical Cycles (337 pages, Download here in french).

Ongoing Projects

Biodiversa MixForChange Project - Mixed Forest plantations for climate Change mitigation and adaptation

MixForChange MAP

The Biodiversa MixForChange project aims to understand how mixed-species forest plantations can contribute to climate change mitigation and adaptation. Building on the international TreeDivNet network, which brings together numerous experimental sites worldwide, the project investigates how tree diversity, species identity, and forest management practices influence carbon sequestration and forest resilience to climate change, with the goal of providing science-based recommendations for plantation management. Within this project, my research focuses primarily on the effects of tree diversity and drought on litter decomposition and soil carbon dynamics. These studies aim to improve our understanding of the ecological mechanisms regulating carbon storage and decomposition in forest ecosystems, and to identify the conditions that promote greater forest resilience to climate-related disturbances.

 

Maia Project (Nouvelle-Aquitaine Region) – Agroecological Scaling and Intensification of Agri-food Systems in Nouvelle-Aquitaine

MAIA Map

The MAIA regional project aims to rethink agricultural production systems to address environmental challenges in Nouvelle-Aquitaine. It investigates the potential of nature-based solutions, which rely on biodiversity and ecosystem services, to reduce pesticide use, maintain soil fertility, and enhance the resilience of agricultural systems to climate change while generating socio-economic benefits. Within this project, my research focuses on soil fertility and soil multifunctionality. Our approach combines biogeochemical analyses of soil functioning with mathematical and modelling tools to better understand the underlying processes and evaluate the role of agricultural, viticultural, and vegetable production practices across Nouvelle-Aquitaine in maintaining soil functions. The objective is to identify the practices that best preserve soil quality and ecosystem services. These studies contribute to the development of more sustainable production systems, balancing agronomic performance, biodiversity conservation, and adaptation to climate change.

 

CARTON Project (French National Research Agency, ANR) – CARbon, Associated Functional Traits, and their OptimizatioN

CARTON Map

The ANR CARTON project aims to improve our understanding of how tree species influence carbon storage in forest soils, a key process for climate change mitigation. Its objective is to identify the functional traits of plants that promote the accumulation and stabilization of soil organic carbon, in order to determine which tree species can combine rapid growth with long-term carbon storage. Within this project, my research focuses on the relationships between tree functional traits and the catabolic capacities of microbial communities in forest soils ranging from northern Sweden to southern Italy. To achieve this, we combine plant trait data, environmental variables, and soil carbon measurements to develop and test statistical models identifying the traits that most strongly influence microbial functioning and carbon sequestration according to tree species identity. By integrating plant traits, microbial functions, and environmental gradients, this work provides new insights into the mechanisms linking aboveground vegetation to belowground ecosystem processes. These studies will improve predictions of carbon storage in forest ecosystems and support forest management strategies aimed at mitigating climate change.

 

•DYNAVATAR Project (EC2CO) - Dynamics of Soil and Phyllosphere Microbial Communities During Forest Litter Decomposition on Biomimetic Substrates

HFA

The DYNAVATAR project investigates the role of microbial communities in forest litter decomposition, with a particular focus on the interactions between microorganisms inhabiting leaf surfaces (phyllosphere) and those living in the soil. The project relies on an innovative approach using artificial biomimetic substrates, allowing experiments to be standardized while controlling the microbial communities under study. By combining chemical, molecular, and modelling approaches, it aims to identify the microbial functions involved in organic matter decomposition and to understand how interactions between microbiomes shape decomposition dynamics. The project also seeks to determine how microbial community succession influences organic matter recycling and carbon cycling in forest ecosystems. The results will improve predictions of soil carbon dynamics and provide new insights into the role of microbiomes in ecosystem functioning (Figure adapted from Fanin et al., 2022, New Phytologist).

 

Past Projects

•Projet VR (Swedish Research Council) - Context-dependency of biodiversity effects.

N_fanin3

Funded by the Swedish Research Council (VR) and conducted in collaboration with the Swedish University of Agricultural Sciences (SLU) in Uppsala and Umeå, and CSIRO in Glen Osmond (Australia), this project investigated how environmental context influences the effects of biodiversity on ecosystem processes. We used a gradient of 30 boreal islands, each representing an independent ecosystem and collectively forming a chronosequence spanning more than 5,000 years. Different plant species (e.g. bilberry and lingonberry) and functional groups (e.g. mosses, trees, and shrubs) were experimentally removed for over 20 years to simulate biodiversity loss on each island. The objective was to identify the mechanisms through which plant diversity shapes soil biodiversity, and in turn, to understand how biodiversity loss affects ecosystem multifunctionality across contrasting environmental conditions.

 

Dipticc Project (French National Research Agency, ANR) – DIversity and Productivity of Forests Impacted by Climate Change

N_fanin4

Conducted in collaboration with Bordeaux Sciences Agro, BIOGECO (Bordeaux), EEF (Nancy), and CEFE (Montpellier), the ANR Dipticc project aimed to assess whether forest biodiversity can mitigate the impacts of climate change. The project relied on two complementary experimental systems: the ORPHEE experiment, where more than 25,000 trees representing five native species were planted in all possible species combinations, and the BIOPROFOR network, consisting of six natural forest sites distributed along elevational gradients in the French Alps. The main objective was to test whether mixed-species stands are more resistant and resilient to drought than monocultures. My research focused on soil functioning, particularly the interactions between tree roots, mycorrhizal fungi, and nutrient availability, to better understand how belowground processes contribute to forest resilience under climate change.

 

•Projet TeaTime4Science - Can drinking tea help us understand climate change?

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The TeaTime4Science project is a large-scale citizen science initiative designed to investigate the environmental factors controlling organic matter decomposition, a key process regulating nutrient cycling and carbon storage in terrestrial ecosystems. The project involves burying standardized green and rooibos tea bags and retrieving them three months later to measure decomposition rates using a globally standardized protocol. In partnership with the French National Forest Office (ONF) and the RENECOFOR forest monitoring network, more than 1200 tea bags were deployed across over 100 forest sites throughout France, spanning a wide range of climatic, edaphic, and forest conditions. By combining decomposition measurements with detailed soil physicochemical properties, vegetation characteristics, and climatic data, the project aims to identify the main environmental drivers regulating decomposition processes. The resulting dataset also contributes to an international database, providing valuable information to improve predictions of how climate change may alter organic matter decomposition, nutrient cycling, and carbon dynamics in forest ecosystems at regional and global scales.

 

Teaching and scientific activities

  • Bordeaux Sciences Agro: Lecturer - Soil science, microbial ecology.
  • University of Bordeaux (Master degrees): Functional ecology, soil ecology, forest ecology.
  • Reviewer > 30 journals, associate editor in Frontiers in Forests & Global Change, section Forest soils.

Publications

[75] Li B., Fu M., Jin G., Song F., Liu Z., Fanin N. (2026). Balancing deterministic and stochastic assembly during needle aging shapes phyllosphere microbial community complexity and stability. Environmental Microbiome. https://doi.org/10.1016/j.fecs.2026.100483

[74] Li, B., Cao, Y., Jin, G., Niinemets, Ü., Liu, Z., & Fanin, N. (2026). Scaling of phyllosphere epiphyllous bacterial diversity with tree size across temperate forests. Forest Ecosystems, 100483. https://dx.doi.org/10.1016/j.fecs.2026.100483, https://hal.inrae.fr/hal-05653322

[73] Jensen J., Blondeel H., MacLaren C., Ahmed I. U., Augusto L., Baeten L., Bakker M. R., Bauhus J., Baum C., Beyer F., Brancalion P., Bönisch E., Castro Sánchez-Bermejo P., Dietrich P., Eisenhauer N., Fanin N., Felton A., Ferlian O., Fransson P., Fritsch E., Glynn C., Godbold D. L., Guillemot J., Haider S., Hajek P., Jactel H., Mereu S., Meredieu C., Muys B., Nordh N.-E., Ponette Q., Rewald B., Robin A., Saito D., Sandén H., Scherer-Lorenzen M., Serrano-León H., Steinparzer M., Verheyen K., Werner R., Yi H., Weih M. (2026). Tree species diversity drives above-ground carbon sequestration through light-related trait shifts. Functional Ecology, 20 p., https://dx.doi.org/10.1111/1365-2435.70320, https://hal.inrae.fr/hal-05597760

[72] Liu P., Zhou J., Moorhead D. L., Mallavarapu M., Margenot A. J., Mori T., Wang X., Fanin N., Ochoa-Hueso R., Wang D., Jin Z., Liu J., Liang G., Cui Y., Yang Y., Liu J., Li Y., Chen X., Shi X., Chen J. (2026). Effects of incubation temperatures on soil extracellular enzyme activity across different soil pH conditions. Journal of Plant Ecology, 102. https://dx.doi.org/10.1093/jpe/rtag102/8697816, https://hal.inrae.fr/hal-05653349

[71] Zhu M., Xu Z., Fanin N., Zhang M., Ye J., Lin F., Mao Z., Wang X. (2026). Environmental filtering drives mycorrhizal tree dominance across a soil fertility gradient in a temperate forest. Journal of Ecology, 114 (3), https://dx.doi.org/10.1111/1365-2745.70298, https://hal.inrae.fr/hal-05579000

[70] Cui H., Chen S., Liu Z., Song H., Chen J., Zhang A., Xiao S., Wang Y., Wang J., Li X., An L., Ding H., Fanin N. (2026). Multifunctionality changes with plant functional groups in Antarctica. Ecology, 107 (2), https://dx.doi.org/10.1002/ecy.70279, https://hal.inrae.fr/hal-05612122

[69] Zhou J., Liu S., van Groenigen K. J., Mueller C. W., Ochoa-Hueso R., Fanin N., Ren Z., Zhang Y., Ma Y., Sun S., Hu J., Zhang Y., Yahdjian L., Wanek W., Olesen J. E., Kuzyakov Y., Liu J., Chen J. (2026). Contrasting responses of particulate and mineral-associated organic carbon stocks to grazing exclusion in an alpine meadow. Agriculture, Ecosystems & Environment 400:110227. https://doi.org/10.1016/j.agee.2026.110227, https://hal.inrae.fr/hal-05612060

[68] Bon L., Fanin N., Bakker M. R., Bertrand I., Trichet P., Augusto L. (2026). Seasonal effects of soil microclimate on microbial activities depend on the understory in two forest ecosystems with contrasting water regimes. Geoderma 465, 117672. https://doi.org/10.1016/j.geoderma.2025.117672, https://hal.inrae.fr/hal-05612083

[67] Du L., Bol R., Tu C., Sun X., Luo R., Liu Q., Luo L., Zhan J., Yin C., Zhu B., Pang X., Fanin N. (2026). Micro‑Faunal and Edaphic Controls on Microbial Carbon Cycling Across Primary and Secondary Successional Trajectories. Global Change Biology 31(12), e70642. https://dx.doi.org/10.1111/gcb.70642, https://hal.inrae.fr/hal-05424178

[66] Bourdin A., Augusto L., Joly F.-X., Bres C., Chahine T., Guillemot J., Hajek P., Jactel H., Jensen J., Mereu S., Muys B., Ponette Q., Sandén H., Parker W. C., Paquette A., Messier C., Robin A., Scherer-Lorenzen M., Serrano-León H., Weih M., Castagneyrol B., Bakker M. R., Fanin N. (2026). Context dependency of tree diversity effects on standardized substrates decomposition: Role of tree functional composition, mycorrhizal type and climatic conditions. Journal of Ecology, 113(12), 3700-3716. https://dx.doi.org/10.1111/1365-2745.70189, https://hal.inrae.fr/hal-05358193

[65] Song Z., Zuo X., Wang H., Wang Z., Zhang X., Hu Y., Hao F., Ma X., Fanin N. (2026). Contrasting impacts of grazing and shrub encroachment on microbial resource limitation in arid grasslands. Agriculture, Ecosystems & Environment, 396:110013. https://dx.doi.org/10.1016/j.agee.2025.110013, https://hal.inrae.fr/hal-05358195

[64] Kempel A., Adamidis G., Anadón J. D., Atkinson J., Auge H., Avtzis D., Bachelot B., Bashirzadeh M., Bota J. L., Classen A., Constantinou I., Crawley M., de Bellis T., Dostal P., Ebeling A., Eisenhauer N., Eldridge D. J., Encina G., Estrada C., Everingham S., Fanin N., Feng Y., Gaspar M., Gooriah L., Graff P., Gusmán Montalván E., Gusmán Montalván P., Hartke T. R., Huang L., Jochum M., Kaljund K., Karmiris I., Koorem K., Korell L., Laine A. L., Le Provost G., Lessard J. P., Liu M., Liu X., Liu Y., Llancabure J., Loïez S., Loydi A., Marrero H., Gockel S., Montoya A., Münzbergová Z., Niu Y., Ott D., Oyarzabal M., Panitsa M., Papatheodorou E., Piper F. I., Püssa K., Rand K., Saiz H., Sanders N. J., Schädler M., Scherber C., Semchenko M., Sepp S. K., Shah M. A., Shaheen I., Stein C., Stewart J., Tang Z., Tschan G., van Nouhuys S., Vandegehuchte M. L., Vernon M., V. R. S., Wang J., Xiao Y., Xystrakis F., Yang J., Yang S., Zografou K., Allan E. (2025). The Bug‐Network (BugNet): A global experimental network testing the effects of invertebrate herbivores and fungal pathogens on plant communities and ecosystem function in open ecosystems. Ecology and Evolution, 15 (10), https://dx.doi.org/10.1002/ece3.72111, https://hal.inrae.fr/hal-05325948

[63] van Galen L., Smith G. R., Margenot A. J., Waldrop M. P., Crowther T. W., Peay K. G., Jackson R. B., Yu K., Abrahão A., Ahmed T. A., Alatalo J. M., Anslan S., Anthony M. A., Araujo A. S. F., Ascher-Jenull J., Bach E. M., Bahram M., Baker C. C. M., Baldrian P., Bardgett R. D., Barrios-Garcia M. N., Bastida F., Beggi F., Benning L. G., Bragazza L., Broadbent A. A. D., Cano-Díaz C., Cates A. M., Cerri C. E. P., Cesarz S., Chen B., Classen A. T., Dahl M. B., Delgado-Baquerizo M., Eisenhauer N., Evgrafova S. Y., Fanin N., Fornasier F., Francisco R., Franco A. L. C., Frey S. D., Fritze H., García C., García-Palacios P., Gómez-Brandón M., Gonzalez-Polo M., Gozalo B., Griffiths R., Guerra C., Hallama M., Hiiesalu I., Hossain M. Z., Hu Y., Insam H., Jassey V. E. J., Jiang L., Kandeler E., Kohout P., Kõljalg U., Krashevska V., Li X., Lu J.-Z., Lu X., Luo S., Lutz S., Mackie-Haas K. A., Maestre F. T., Malmivaara-Lämsä M., Mangelsdorf K., Manjarrez M., Marhan S., Martin A., Mason K. E., Mayor J., McCulley R. L., Moora M., Morais P. V., Muñoz-Rojas M., Murugan R., Nottingham A. T., Ochoa V., Ochoa-Hueso R., Oja J., Olsson P. A., Öpik M., Ostle N., Peltoniemi K., Pennanen T., Pescador D. S., Png G. K., Poll C., Põlme S., Potapov A. M., Priemé A., Pritchard W., Puissant J., Rocha S. M. B., Rosinger C., Ruess L., Sayer E. J., Scheu S., Sinsabaugh R. L., Slaughter L. C., Soudzilovskaia N. A., Sousa J. P., Stanish L., Sugiyama S., Tedersoo L., Trivedi P., Vahter T., Voriskova J., Wagner D., Wang C., Wardle D. A., Whitaker J., Yang Y., Zhong Z., Zhu K., Ziolkowski L. A., Zobel M. & van den Hoogen J. (2025). A global database of soil microbial phospholipid fatty acids and enzyme activities. Scientific Data, 12 (1), 1568, https://dx.doi.org/10.1038/s41597-025-05759-2, https://hal.inrae.fr/hal-05293951

[62] Fanin N., Augusto L., Altinalmazis-Kondylis A., Bon L., Bourdin A., Hättenschwiler S., Martin-Blangy S., Maxwell T. L., Meredieu C., Morin X., Plat N., Toïgo M., Jactel H., Bakker M. R. (2025). Soil secrets and tree tales: An in-depth comparison of carbon storage in mixed and pure stands of pine and birch. Forest Ecology and Management, 592, 122827, https://dx.doi.org/10.1016/j.foreco.2025.122827, https://hal.inrae.fr/hal-05111798

[61] Sarneel J., Atkins J. W., Augusto L., Barel J. M., Duddigan S., Fanin N., Hefting M., Lembrechts J. J., Marín C., McDaniel M. D., Montagnani L., Parkhurst T., Petit Bon M., Sofo A., Keuskamp J. A. (2025). The Assumptions of the Tea Bag Index and Their Implications: A Reply to Mori 2025. Ecology Letters, 28 (4), e70117, https://dx.doi.org/10.1111/ele.70117, https://hal.inrae.fr/hal-05074860

[60] Fanin N., Asplund J., Gundale M., Kardol P., Nilsson M., Wardle D. (2025). Effects of boreal ground layer shrubs and bryophytes on the diversity, biomass and composition of lichen communities across contrasting ecosystems. Oikos, https://dx.doi.org/10.1002/oik.11099, https://hal.inrae.fr/hal-05034669

[59] Chen X., Cao J., Sinsabaugh R., Moorhead D., Bardgett R., Fanin N., Nottingham A., Zheng X., Chen J. (2025). Soil extracellular enzymes as drivers of soil carbon storage under nitrogen addition. Biological Reviews, https://dx.doi.org/10.1111/brv.70021, https://hal.inrae.fr/hal-05034707 

[58] Wang L., Liu Z., Bres C., Jin G., Fanin N. (2025). Exploring microbial ubiquity across different plant functional groups and organs. Plant and Soil, 1-17, https://dx.doi.org/10.1007/s11104-025-07356-z, https://hal.inrae.fr/hal-05178631

[57] Blondel P., Fanin N., Joubard B., Milin S., Rusch A., Giffard B. (2025). Organic matter content rather than farming practices modulates microbial activities in vineyard soils. Pedobiologia, 108, 151017, https://dx.doi.org/10.1016/j.pedobi.2024.151017, https://hal.inrae.fr/hal-05064995

[56] Wang L., Liu Z., Bres C., Jin G., Fanin N. (2024). Coniferous tree species identity and leaf aging alter the composition of phyllosphere communities through changes in leaf traits. Microbial ecology, 87 (1), 126, https://dx.doi.org/10.1007/s00248-024-02440-w, https://hal.inrae.fr/hal-05044451

[55] Dommanget F., Forey E., Chauvat M., Erktan A., Daniès L., Chesseron C., Fanin N. (2024). Asian knotweed’s impacts on soil chemistry and enzyme activities are higher in soils with low-nutrient status. Pedobiologia, 107, 151002, https://dx.doi.org/10.1016/j.pedobi.2024.151002, https://hal.inrae.fr/hal-04846629

[54] Sarneel J., Hefting M., Sandén T., van den Hoogen J., Routh D., Adhikari B., Alatalo J. M., Aleksanyan A., Althuizen I. H. J., Alsafran M. H. S. A., Atkins J. W., Augusto L., Aurela M., Azarov A. V., Barrio I. C., Beier C., Bejarano M. D., Benham S. E., Berg B., Bezler N. V., Björnsdóttir K., Bolinder M. A., Carbognani M., Cazzolla Gatti R., Chelli S., Chistotin M. V., Christiansen C. T., Courtois P., Crowther T. W., Dechoum M. S., Djukic I., Duddigan S., Egerton-Warburton L. M., Fanin N., Fantappiè M., Fares S., Fernandes G. W., Filippova N. V., Fliessbach A., Fuentes D., Godoy R., Grünwald T., Guzmán G., Hawes J. E., He Y., Hero J.-M., Hess L. L., Hogendoorn K., Høye T. T., Jans W. W. P., Jónsdóttir I. S., Keller S., Kepfer-Rojas S., Kuz'menko N. N., Larsen K. S., Laudon H., Lembrechts J. J., Li J., Limousin J.-M., Lukin S. M., Marques R., Marín C., McDaniel M. D., Meek Q., Merzlaya G. E., Michelsen A., Montagnani L., Mueller P., Murugan R., Myers-Smith I. H., Nolte S., Ochoa-Hueso R., Okafor B. N., Okorkov V. V., Onipchenko V. G., Orozco M. C., Parkhurst T., Peres C. A., Petit Bon M., Petraglia A., Pingel M., Rebmann C., Scheffers B. R., Schmidt I., Scholes M. C., Sheffer E., Shevtsova L. K., Smith S. W., Sofo A., Stevenson P. R., Strouhalová B., Sundsdal A., Sühs R. B., Tamene G., Thomas H. J. D., Tolunay D., Tomaselli M., Tresch S., Tucker D. L., Ulyshen M. D., Valdecantos A., Vandvik V., Vanguelova E. I., Verheyen K., Wang X., Yahdjian L., Yumashev X. S., Keuskamp J. A. (2024). Reading tea leaves worldwide: Decoupled drivers of initial litter decomposition mass‐loss rate and stabilization. Ecology Letters, 27 (5), https://dx.doi.org/10.1111/ele.14415, https://hal.inrae.fr/hal-04574740

[53] Khalfallah F., Bon L., El Mazlouzi M., Bakker M. R., Fanin N., Bellanger R., Bernier F., de Schrijver A., Ducatillon C., Fotelli M. N., Gateble G., Gundale M. J., Larsson M., Legout A., Mason W. L., Nordin A., Smolander A., Spyroglou G., Vanguelova E. I., Verheyen K., Vesterdal L., Zeller B., Augusto L., Derrien D., Buée M. (2024). “Ectomycorrhizal exploration type” could be a functional trait explaining the spatial distribution of tree symbiotic fungi as a function of forest humus forms. Mycorrhiza, https://dx.doi.org/10.1007/s00572-024-01146-8, https://hal.inrae.fr/hal-04592027

[52] Hu Z., Delgado-Baquerizo M., Fanin N., Chen X., Zhou Y., Du G., Hu F., Jiang L., Hu S., Liu M. (2024). Nutrient-induced acidification modulates soil biodiversity-function relationships. Nature Communications, 15, 2858, https://dx.doi.org/10.1038/s41467-024-47323-3, https://hal.inrae.fr/hal-04574829 

[51] Lin D., Shen R., Lin J., Zhu G., Yang Y., Fanin N. (2024). Relationships between rhizosphere microbial communities, soil abiotic properties and root trait variation within a pine species. Journal of Ecology, https://dx.doi.org/10.1111/1365-2745.14297, https://hal.inrae.fr/hal-04540086

[50] Ouedraogo F., Cornu J.-Y., Fanin N., Janot N., Sourzac M., Parlanti E., Denaix L. (2024). Changes over time in organic matter dynamics and copper solubility in a vineyard soil after incorporation of cover crop residues: Insights from a batch experiment. Chemosphere, 350, 141137, https://dx.doi.org/10.1016/j.chemosphere.2024.141137, https://hal.inrae.fr/hal-04495783 

[49] Zhu M., Fanin N., Wang Q., Xu Z., Liang S., Ye J., Lin F., Yuan Z., Mao Z., Wang X., Hao Z. (2024). High functional breadth of microbial communities decreases home-field advantage of litter decomposition. Soil Biology and Biochemistry, 188, 109232, https://dx.doi.org/10.1016/j.soilbio.2023.109232, https://hal.inrae.fr/hal-04503312

[48] Dommanget F., François A., Chauvat M., Forey E., Erktan A., Fanin N., Chesseron C., Albert A. (2023). Renouées asiatiques envahissantes : la restauration de berges par le génie végétal est-elle si bénéfique à la qualité chimique et à la biodiversité du sol? Sciences Eaux & Territoires, (43), 87-93, https://dx.doi.org/10.20870/Revue-SET.2023.43.7627, https://hal.inrae.fr/hal-04281597

[47] Hou J., Fanin N., Ni Z. (2023). A network prediction model to quantify relationship between biodiversity and ecosystem functioning (BEF). Methods in Ecology and Evolution, 14 (12), 2907-2916, https://dx.doi.org/10.1111/2041-210X.14245, https://hal.inrae.fr/hal-04574928 

[46] Li B., Li Y., Fanin N., Veen G., Han X., Du X., Li Y., Sun Y., Li Q. (2023). Stoichiometric imbalances between soil microorganisms and their resources regulate litter decomposition. Functional Ecology, https://dx.doi.org/10.1111/1365-2435.14459, https://hal.inrae.fr/hal-04286738

[45] Bourget M., Fanin N., Fromin N., Hättenschwiler S., Roumet C., Shihan A., Huys R., Sauvadet M., Freschet G. (2023). Plant litter chemistry drives long‐lasting changes in the catabolic capacities of soil microbial communities. Functional Ecology, 37, 2014-2028, https://dx.doi.org/10.1111/1365-2435.14379, https://hal.inrae.fr/hal-04122640 

[44] Maxwell T., Augusto L., Tian Y., Wanek W., Fanin N. (2023). Water availability is a stronger driver of soil microbial processing of organic nitrogen than tree species composition. European Journal of Soil Science, 74 (1), https://dx.doi.org/10.1111/ejss.13350, https://hal.inrae.fr/hal-04098843 

[43] Bon L., Augusto L., Gaudry J., Bakker M., Lambrot C., Milin S., Trichet P., Fanin N. (2023). Effects of fertilisation and understory removal on aboveground and belowground carbon stocks in wet and dry moorlands in south-western France. European Journal of Forest Research, 142 (4), 723-737, https://dx.doi.org/10.1007/s10342-023-01551-2, https://hal.inrae.fr/hal-04160207 

[42] Lin J., Lin D., Zhu G., Wang H., Qian S., Zhao L., Yang Y., Fanin N. (2022). Earthworms exert long lasting afterlife effects on soil microbial communities. Geoderma, 420, 115906, https://dx.doi.org/10.1016/j.geoderma.2022.115906, https://hal.inrae.fr/hal-04029917

[41] Fanin N., Clemmensen K., Lindahl B., Farrell M., Nilsson M., Gundale M., Kardol P., Wardle D. (2022). Ericoid shrubs shape fungal communities and suppress organic matter decomposition in boreal forests. New Phytologist, 1-14, https://dx.doi.org/10.1111/nph.18353, https://hal.inrae.fr/hal-03745377 

[40] Maxwell T., Fanin N., Parker W., Bakker M., Belleau A., Meredieu C., Augusto L., Munson A. (2022). Tree species identity drives nutrient use efficiency in young mixed‐species plantations, at both high and low water availability. Functional Ecology, 36 (8), 2069 - 2083, https://dx.doi.org/10.1111/1365-2435.14109, https://hal.inrae.fr/hal-03745508 

[39] Bernard L., Basile-Doelsch I., Derrien D., Fanin N., Fontaine S., Guenet B., Karimi B., Maron P. (2022). Le Priming Effect dans le sol: mécanismes, acteurs et conséquences sur les services écosystémiques dans un contexte de changement global. Étude et Gestion des Sols, 29, 239-274, https://hal.inrae.fr/hal-03685054 

[38] Li B., Li Y., Fanin N., Han X., Du X., Liu H., Li Y., Li Q. (2022). Adaptation of soil micro-food web to elemental limitation: evidence from the forest-steppe ecotone. Soil Biology and Biochemistry, 170, https://dx.doi.org/10.1016/j.soilbio.2022.108698, https://hal.inrae.fr/hal-03750308

[37] Bernard L., Basile-Doelsch I., Derrien D., Fanin N., Fontaine S., Guenet B., Karimi B., Marsden C., Maron P. (2022). Advancing the mechanistic understanding of the priming effect on soil organic matter mineralisation. Functional Ecology, 36 (6), 1355-1377, https://dx.doi.org/10.1111/1365-2435.14038, https://hal.inrae.fr/hal-03639598 

[36] Fanin N., Mooshammer M., Sauvadet M., Meng C., Alvarez G., Bernard L., Bertrand I., Blagodatskaya E., Bon L., Fontaine S., Niu S., Lashermes G., Maxwell T. L., Weintraub M. N., Wingate L., Moorhead D., Nottingham A. T. (2022). Soil enzymes in response to climate warming: mechanisms and feedbacks. Functional Ecology, https://dx.doi.org/10.1111/1365-2435.14027, https://hal.inrae.fr/hal-03590923

[35] Maillard F., Jusino M., Andrews E., Moran M., Vaziri G., Banik M., Fanin N., Trettin C., Lindner D., Schilling J. (2022). Wood-decay type and fungal guild dominance across a North American log transplant experiment. Fungal Ecology, 59, 101151, https://dx.doi.org/10.1016/j.funeco.2022.101151, https://hal.inrae.fr/hal-03845610 

[34] Spitzer C., Lindahl B., Wardle D., Sundqvist M., Gundale M., Fanin N., Kardol P. (2021). Root trait-microbial relationships across tundra plant species. New Phytologist, 229 (3), 1508-1520, https://dx.doi.org/10.1111/nph.16982, https://hal.inrae.fr/hal-03006806 

[33] Fanin N., Lin D., Freschet G., Keiser A., Augusto L., Wardle D., Veen G. (2021). Home-field advantage of litter decomposition: from the phyllosphere to the soil. New Phytologist, 231 (4), 1353-1358, https://dx.doi.org/10.1111/nph.17475, https://hal.inrae.fr/hal-03267667 

[32] Fanin N., Maxwell T., Altinalmazis‐Kondylis A., Bon L., Meredieu C., Jactel H., Bakker M., Augusto L. (2022). Effects of mixing tree species and water availability on soil organic carbon stocks are depth dependent in a temperate podzol. European Journal of Soil Science, 73 (1), e13133, https://dx.doi.org/10.1111/ejss.13133, https://hal.inrae.fr/hal-03256070

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V., Hederová L., Heinesch B., Helfter C., Hepenstrick D., Herberich M., Herbst M., Hermanutz L., Hik D. S., Hoffrén R., Homeier J., Hörtnagl L., Høye T. T., Hrbacek F., Hylander K., Iwata H., Jackowicz-Korczynski M. A., Jactel H., Järveoja J., Jastrzębowski S., Jentsch A., Jiménez J. J., Jónsdóttir I. S., Jucker T., Jump A. S., Juszczak R., Kanka R., Kašpar V., Kazakis G., Kelly J., Khuroo A. A., Klemedtsson L., Klisz M., Kljun N., Knohl A., Kobler J., Kollár J., Kotowska M. M., Kovács B., Kreyling J., Lamprecht A., Lang S. I., Larson C., Larson K., Laska K., le Maire G., Leihy R. I., Lens L., Liljebladh B., Lohila A., Lorite J., Loubet B., Lynn J., Macek M., Mackenzie R., Magliulo E., Maier R., Malfasi F., Máliš F., Man M., Manca G., Manco A., Manise T., Manolaki P., Marciniak F., Matula R., Mazzolari A. C., Medinets S., Medinets V., Meeussen C., Merinero S., Mesquita R. C. G., Meusburger K., Meysman F. J. R., Michaletz S. T., Milbau A., Moiseev D., Moiseev P., Mondoni A., Monfries R., Montagnani L., Moriana-Armendariz M., Morra di Cella U., Mörsdorf M., Mosedale J. R., Muffler L., Muñoz-Rojas M., Myers J. A., Myers-Smith I. H., Nagy L., Nardino M., Naujokaitis-Lewis I., Newling E., Nicklas L., Niedrist G., Niessner A., Nilsson M. B., Normand S., Nosetto M. D., Nouvellon Y., Nuñez M. A., Ogaya R., Ogée J., Okello J., Olejnik J., Olesen J. E., Opedal Ø. H., Orsenigo S., Palaj A., Pampuch T., Panov A. V., Pärtel M., Pastor A., Pauchard A., Pauli H., Pavelka M., Pearse W. D., Peichl M., Pellissier L., Penczykowski R. M., Penuelas J., Petit Bon M., Petraglia A., Phartyal S. S., Phoenix G. K., Pio C., Pitacco A., Pitteloud C., Plichta R., Porro F., Portillo-Estrada M., Poulenard J., Poyatos R., Prokushkin A. S., Puchalka R., Pușcaș M., Radujković D., Randall K., Ratier Backes A., Remmele S., Remmers W., Renault D., Risch A. C., Rixen C., Robinson S. A., Robroek B. J. M., Rocha A. V., Rossi C., Rossi G., Roupsard O., Rubtsov A. V., Saccone P., Sagot C., Sallo Bravo J., Santos C. C., Sarneel J. M., Scharnweber T., Schmeddes J., Schmidt M., Scholten T., Schuchardt M., Schwartz N., Scott T., Seeber J., Segalin de Andrade A. C., Seipel T., Semenchuk P., Senior R. A., Serra-Diaz J. M., Sewerniak P., Shekhar A., Sidenko N. V., Siebicke L., Siegwart Collier L., Simpson E., Siqueira D. P., Sitková Z., Six J., Smiljanic M., Smith S. W., Smith-Tripp S., Somers B., Sørensen M. V., Souza J. J. L. L., Souza B. I., Souza Dias A., Spasojevic M. J., Speed J. D. M., Spicher F., Stanisci A., Steinbauer K., Steinbrecher R., Steinwandter M., Stemkovski M., Stephan J. G., Stiegler C., Stoll S., Svátek M., Svoboda M., Tagesson T., Tanentzap A. J., Tanneberger F., Theurillat J.-P., Thomas H. J. D., Thomas A. D., Tielbörger K., Tomaselli M., Treier U. A., Trouillier M., Turtureanu P. D., Tutton R., Tyystjärvi V. A., Ueyama M., Ujházy K., Ujházyová M., Uogintas D., Urban A. V., Urban J., Urbaniak M., Ursu T.-M., Vaccari F. P., Van de Vondel S., van den Brink L., Van Geel M., Vandvik V., Vangansbeke P., Varlagin A., Veen G. F., Veenendaal E., Venn S. E., Verbeeck H., Verbrugggen E., Verheijen F. G. A., Villar L., Vitale L., Vittoz P., Vives-Ingla M., von Oppen J., Walz J., Wang R., Wang Y., Way R. G., Wedegärtner R. E. M., Weigel R., Wild J., Wilkinson M., Wilmking M., Wingate L., Winkler M., Wipf S., Wohlfahrt G., Xenakis G., Yang Y., Yu Z., Yu K., Zellweger F., Zhang J., Zhang Z., Zhao P., Ziemblińska K., Zimmermann R., Zong S., Zyryanov V. I., Nijs I., Lenoir J. (2022). Global maps of soil temperature. Global Change Biology, 28 (9), 3110-3144, https://dx.doi.org/10.1111/gcb.16060, https://hal.inrae.fr/hal-03518443 

[30] Altinalmazis-Kondylis A., Muessig K., Meredieu C., Jactel H., Augusto L., Fanin N., Bakker M. (2020). Effect of tree mixtures and water availability on belowground complementarity of fine roots of birch and pine planted on sandy podzol. Plant and Soil, 457, 437-455, https://dx.doi.org/10.1007/s11104-020-04741-8, https://hal.inrae.fr/hal-03093791 

[29] Spitzer C., Wardle D., Lindahl B., Sundqvist M., Gundale M., Fanin N., Kardol P. (2021). Root traits and soil micro‐organisms as drivers of plant-soil feedbacks within the sub‐arctic tundra meadow. Journal of Ecology, 1-13, https://dx.doi.org/10.1111/1365-2745.13814, https://hal.inrae.fr/hal-03464328 

[28] Lin D., Yang G., Dou P., Qian S., Zhao L., Yang Y., Fanin N. (2020). Microplastics negatively affect soil fauna but stimulate microbial activity: insights from a field-based microplastic addition experiment. Proceedings of the Royal Society B: Biological Sciences, 287 (1934), 1-9, https://dx.doi.org/10.1098/rspb.2020.1268, https://hal.inrae.fr/hal-03173558 

[27] Fanin N., Bezaud S., Sarneel J., Cecchini S., Nicolas M., Augusto L. (2020). Relative Importance of Climate, Soil and Plant Functional Traits During the Early Decomposition Stage of Standardized Litter. Ecosystems, 23 (5), 1004-1018, https://dx.doi.org/10.1007/s10021-019-00452-z, https://hal.inrae.fr/hal-04642793 

[26] Fanin N., Alavoine G., Bertrand I. (2020). Temporal dynamics of litter quality, soil properties and microbial strategies as main drivers of the priming effect. Geoderma, 377, 114576, https://dx.doi.org/10.1016/j.geoderma.2020.114576, https://hal.inrae.fr/hal-02911746

[25] Maxwell T., Augusto L., Bon L., Courbineau A., Altinalmazis-Kondylis A., Milin S., Bakker M., Jactel H., Fanin N. (2020). Effect of a tree mixture and water availability on soil nutrients and extracellular enzyme activities along the soil profile in an experimental forest. Soil Biology and Biochemistry, 148, 1-11, https://dx.doi.org/10.1016/j.soilbio.2020.107864, https://hal.inrae.fr/hal-02947095 

[24] Lin D., Dou P., Yang G., Qian S., Wang H., Zhao L., Yang Y., Mi X., Ma K., Fanin N. (2020). Home‐field advantage of litter decomposition differs between leaves and fine roots. New Phytologist, 227 (4), 995-1000, https://dx.doi.org/10.1111/nph.16517, https://hal.inrae.fr/hal-03345983 

[23] Graham E. B., Averill C., Bond-Lamberty B., Knelman J. E., Krause S., Peralta A. L., Shade A., Smith A. P., Cheng S. J., Fanin N., Freund C., Garcia P. E., Gibbons S. M., Van Goethem M. W., Ben Guebila M., Kemppinen J., Nowicki R. J., Pausas J. G., Reed S. P., Rocca J., Sengupta A., Sihi D., Simonin M., Słowiński M., Spawn S. A., Sutherland I., Tonkin J. D., Wisnoski N. I., Zipper S. C., Contributor Consortium (2021-03-03). Toward a generalizable framework of disturbance ecology through crowdsourced science. Frontiers in Ecology and Evolution, 9, https://dx.doi.org/10.3389/fevo.2021.588940, https://hal.inrae.fr/hal-03220658 

[22] Lin D., Yang S., Dou P., Wang H., Wang F., Qian S., Yang G., Zhao L., Yang Y., Fanin N. (2020). A plant economics spectrum of litter decomposition among coexisting fern species in a sub-tropical forest. Annals of Botany, 125 (1), 1-11, https://dx.doi.org/10.1093/aob/mcz166, https://hal.inrae.fr/hal-02620344 

[21] Wardle D., Gundale M., Kardol P., Nilsson M., Fanin N. (2020). Impact of plant functional group and species removals on soil and plant nitrogen and phosphorus across a retrogressive chronosequence. Journal of Ecology, 108 (2), 561-573, https://dx.doi.org/10.1111/1365-2745.13283, https://hal.inrae.fr/hal-02527321 

[20] Lin D., Wang F., Fanin N., Pang M., Dou P., Wang H., Qian S., Zhao L., Yang Y., Mi X., Ma K. (2019). Soil fauna promote litter decomposition but do not alter the relationship between leaf economics spectrum and litter decomposability. Soil Biology and Biochemistry, 136, 1-8, https://dx.doi.org/10.1016/j.soilbio.2019.107519, https://hal.inrae.fr/hal-02171446

[19] Augusto L., Fanin N., Bakker M. R. (2019). When plants eat rocks: Functional adaptation of roots on rock outcrops. Functional Ecology, 33 (5), 760-761, https://dx.doi.org/10.1111/1365-2435.13325, https://hal.inrae.fr/hal-02623798 

[18] Sauvadet M., Fanin N., Chauvat M., Bertrand I. (2019). Can the comparison of above- and below-ground litter decomposition improve our understanding of bacterial and fungal successions? Soil Biology and Biochemistry, 132, 24-27, https://dx.doi.org/10.1016/j.soilbio.2019.01.022, https://hal.inrae.fr/hal-02321811 

[17] Fanin N., Kardol P., Farrell M., Kempel A., Ciobanu M., Nilsson M., Gundale M. J., Wardle D. A. (2019). Effects of plant functional group removal on structure and function of soil communities across contrasting ecosystems. Ecology Letters, 22 (7), 1095-1103, https://dx.doi.org/10.1111/ele.13266, https://hal.inrae.fr/hal-02629183

[16] Lin D., Pang M., Fanin N., Wang H., Qian S., Zhao L., Yang Y., Mi X., Ma K. (2019). Fungi participate in driving home-field advantage of litter decomposition in a subtropical forest. Plant and Soil, 434 (1-2), 467-480, https://dx.doi.org/10.1007/s11104-018-3865-5, https://hal.inrae.fr/hal-02627353

[15] Fanin N., Kardol P., Farrell M., Nilsson M.-C., Gundale M. J., Wardle D. A. (2019). The ratio of Gram-positive to Gram-negative bacterial PLFA markers as an indicator of carbon availability in organic soils. Soil Biology and Biochemistry, 128, 111-114, https://dx.doi.org/10.1016/j.soilbio.2018.10.010, https://hal.inrae.fr/hal-02624611 

[14] Kardol P., Fanin N., Wardle D. A. (2018). Long-term effects of species loss on community properties across contrasting ecosystems. Nature, 557 (7707), 710-713, https://dx.doi.org/10.1038/s41586-018-0138-7, https://hal.inrae.fr/hal-02626980 

Press communication on biodiversity

Interview France Inter, La Science de l’environnement dans « La Tête au carré ».

[13] Fanin N., Gundale M. J., Farrell M., Ciobanu M., Baldock J. A., Nilsson M.-C., Kardol P., Wardle D. A. (2018). Consistent effects of biodiversity loss on multifunctionality across contrasting ecosystems. Nature Ecology & Evolution, 2 (2), 269-278, https://dx.doi.org/10.1038/s41559-017-0415-0, https://hal.inrae.fr/hal-02621923 

Press communication on multifunctionality

[12] Fanin N., Fromin N., Barantal S., Hättenschwiler S. (2017). Stoichiometric plasticity of microbial communities is similar between litter and soil in a tropical rainforest. Scientific Reports, 7 (1), 1-7, https://dx.doi.org/10.1038/s41598-017-12609-8, https://hal.inrae.fr/hal-02127308

[11] Schneider A. R., Gommeaux M., Duclercq J., Fanin N., Conreux A., Alahmad A., Lacoux J., Roger D., Spicher F., Ponthieu M., Cancès B., Morvan X., Marin B. (2017). Response of bacterial communities to Pb smelter pollution in contrasting soils. Science of the Total Environment, 605-606, 436-444, https://dx.doi.org/10.1016/j.scitotenv.2017.06.159, https://hal.inrae.fr/hal-01604416

[10] Fanin N., Moorhead D., Bertrand I. (2016). Eco-enzymatic stoichiometry and enzymatic vectors reveal differential C, N, P dynamics in decaying litter along a land-use gradient. Biogeochemistry, 129, 21-36, https://dx.doi.org/10.1007/s10533-016-0217-5, https://hal.inrae.fr/hal-02637317

[9] Sauvadet M., Chauvat M., Fanin N., Coulibaly S., Bertrand I. (2016). Comparing the effects of litter quantity and quality on soil biota structure and functioning: Application to a cultivated soil in Northern France. Applied Soil Ecology, 107, 261-271, https://dx.doi.org/10.1016/j.apsoil.2016.06.010, https://hal.inrae.fr/hal-02633738 

[8] Fanin N., Bertrand I. (2016). Aboveground litter quality is a better predictor than belowground microbial communities when estimating carbon mineralization along a land-use gradient. Soil Biology and Biochemistry, 94, https://dx.doi.org/10.1016/j.soilbio.2015.11.007, https://hal.inrae.fr/hal-01269407

[7] Fanin N., Hättenschwiler S., Chavez Soria P. F., Fromin N. (2016). (A)synchronous availabilities of N and P regulate the activity and structure of the microbial decomposer community. Frontiers in Microbiology, 6, 1-13, https://dx.doi.org/10.3389/fmicb.2015.01507, https://hal.inrae.fr/hal-01604732 

[6] Fanin N., Fromin N., Bertrand I. (2016). Functional breadth and home-field advantage generate functional differences among soil microbial decomposers. Ecology, 97 (4), https://dx.doi.org/10.1890/15-1263.1, https://hal.inrae.fr/hal-01269374

[5] Fanin N., Hättenschwiler S., Schimann H., Fromin N. (2015). Interactive effects of C, N and P fertilization on soil microbial community structure and function in an Amazonian rain forest. Functional Ecology, 29 (1), 140-150, https://dx.doi.org/10.1111/1365-2435.12329, https://hal.inrae.fr/hal-02127024 

[4] Fanin N., Hättenschwiler S., Fromin N. (2014). Litter fingerprint on microbial biomass, activity, and community structure in the underlying soil. Plant and Soil, 379 (1-2), 79-91, https://dx.doi.org/10.1007/s11104-014-2051-7, https://hal.inrae.fr/hal-01605484

[3] Fanin N., Fromin N., Buatois B., Hättenschwiler S. (2013). An experimental test of the hypothesis of non-homeostatic consumer stoichiometry in a plant litter-microbe system. Ecology Letters, 16 (6), 764-772, https://dx.doi.org/10.1111/ele.12108, https://hal.inrae.fr/hal-01604136

[2] Fanin N., Barantal S., Fromin N., Schimann H., Schevin P., Hättenschwiler S. (2012). Distinct microbial limitations in litter and underlying soil revealed by carbon and nutrient fertilization in a tropical rainforest. PLoS ONE, 7 (12), 1-11, https://dx.doi.org/10.1371/journal.pone.0049990, https://hal.inrae.fr/hal-01601804 

[1] Fanin N., Hättenschwiler S., Barantal S., Schimann H., Fromin N. (2011). Does variability in litter quality determine soil microbial respiration in an amazonian rainforest? Soil Biology and Biochemistry, 43 (5), 1014-1022, https://dx.doi.org/10.1016/j.soilbio.2011.01.018, https://hal.inrae.fr/hal-01032139

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